FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10186306
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG581210.5705797567832736No Hit
GGGGGT297340.2919016962577013No Hit
GTGGGG291680.28634521680381486No Hit
GGGTGG276100.27105017265336423No Hit
CGGGGG270470.2655231445040037No Hit
TGGGGG267780.26288234419818135No Hit
GGCGGG261080.25630488618739705No Hit
GGGGCG251930.24732223830699765No Hit
AGGGGG242280.23784873535116655No Hit
GGGGTG237640.23329360025116072No Hit
GGTGGG231260.2270302894886527No Hit
GGGCGG220480.21644745406234606No Hit
GCGGGG219110.21510251115566328No Hit
GGGGGC212660.20877048068259485No Hit
GGAGGG209780.20594315544810848No Hit
GGGGGA206960.20317473282267387No Hit
GGGGAG203860.20013143135499756No Hit
GGGAGG189770.18629913532933332No Hit
GAGGGG178520.17525489613212092No Hit
CTGGGG157590.1547077026745515No Hit
GGGTGT156620.15375544382821407No Hit
GTGTGG154210.15138952236463346No Hit
GTGGGT149630.14689328987367942No Hit
TTGGGG147020.14433102637992615No Hit
GGGGTT145870.14320205970643332No Hit
CGGGGT145120.14246577709328584No Hit
TGGTGG144780.1421319956419923No Hit
CGGTGG142490.13988387939651528No Hit
GGCGGT142050.13945192693013542No Hit
GTGGCG141860.1392654020014714No Hit
GGGGCT139460.1369092976393994No Hit
TGGGGT138870.13633008865039004No Hit
GTCGGG138520.1359864900975879No Hit
GGGTTG137920.1353974640070699No Hit
ATGGGG133900.1314509892005993No Hit
GGCTGG132180.1297624477411144No Hit
GGGTCG128520.12616938858895463No Hit
GTAGGG128390.12604176626934238No Hit
CGCGGG128370.12602213206632512No Hit
AGGGGT128120.12577670452860928No Hit
GGGTAG126080.1237740158208481No Hit
TGCGGG124600.1223210847975704No Hit
CGGGCG124110.12184004682364735No Hit
GTGGTG123350.12109394710899124No Hit
GTTGGG121900.1196704673902394No Hit
AGGTGG121600.1193759543449804No Hit
GGTGGT120180.11798192593075447No Hit
GGCGCG119780.11758924187040916No Hit
GGCCGG119370.1171867407085552No Hit
GGTTGG118800.11662716592256309No Hit
GGGCGT116210.11408453663182708No Hit
TGGGCG115540.11342679083074865No Hit
TAGGGG114540.11244508067988533No Hit
GTGCGG114310.11221928734518677No Hit
TCGGGG112870.11080562472794357No Hit
GGGGTA112680.11061909979927953No Hit
GGAGGT112480.11042275776910687No Hit
CGGGTG112410.11035403805854645No Hit
CCGGGG112250.11019696443440831No Hit
GGGGAT112030.10998098820121838No Hit
GGGTGC110500.1084789716703975No Hit
TGGGTG109410.10740890760595648No Hit
TGAGGG109180.1071831142712579No Hit
CAGGGG108760.1067707960078953No Hit
GGCAGG108590.10660390528224856No Hit
GCAGGG108320.10633884354151545No Hit
GGATGG107850.10587743977060968No Hit
GTGGGC107730.10575963455250609No Hit
GCCGGG107520.10555347542082479No Hit
TGGCGG107480.10551420701479025No Hit
GTGGAG107050.10509207164991902No Hit
GGGGCA106700.10474847309711685No Hit
GGGTGA106440.1044932284578924No Hit
AAGGGG106430.10448341135638375No Hit
GGGGCC105920.10398273917944346No Hit
GCGGGT105780.10384529975832259No Hit
CTGTGG104140.10223529511090675No Hit
TGGAGG103640.10174444003547509No Hit
CGTGGG103320.10143029278719881No Hit
CGGGGC103190.10130267046758658No Hit
TGTGGG103160.10127321916306069No Hit
GGGCCG103030.10114559684344845No Hit
AGGGTG102890.10100815742232758No Hit
GGCGTG102540.10066455886952543No Hit
GGCGGA102140.10027187480918008No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)