FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10264634
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG626840.6106793481384724No Hit
AGGGGG292200.2846667499299049No Hit
GGGTGG283140.27584032708813583No Hit
GGGGGT282740.2754506395454529No Hit
GTGGGG279950.27273256893523923No Hit
GGGGTG274770.26768611525749486No Hit
GGTGGG258460.251796605704597No Hit
TGGGGG255350.24876678506023692No Hit
GGGGAG239190.2330234083358452No Hit
GGGGGA234300.22825947812654596No Hit
GGAGGG225320.21951099279331343No Hit
GGGAGG224100.21832244578813037No Hit
GAGGGG223510.217747656662673No Hit
GCGGGG213050.20755732742151353No Hit
GGCGGG211470.2060180616279158No Hit
GGGCGG210460.20503410058264135No Hit
GGGGGC203780.19852631861983586No Hit
GGGGCG198370.19325579460504877No Hit
CGGGGG197190.192106216354134No Hit
GGGTTG166120.1618372364762348No Hit
GGGTGT157950.15387786841693527No Hit
ATGGGG157060.15301081363446567No Hit
AGGTGG156080.15205607915489244No Hit
AGGGGT154370.15039016490992274No Hit
GTGGGT154370.15039016490992274No Hit
GTTGGG152030.14811049278522742No Hit
GGTGTG148490.14466175803248318No Hit
GTAGGG147060.1432686250673916No Hit
TGGGTG146500.14272306250763545No Hit
GTGTGG145520.14176832802806216No Hit
GTGGTG144340.14061874977714744No Hit
AAGGGG141900.13824165576678135No Hit
AGGGTG141360.13771557758415937No Hit
GGGGTT140120.13650754620184216No Hit
GGTGGT139000.13541642108232987No Hit
TGGGGT137160.13362385838598823No Hit
TTGGGG136750.1332244286547382No Hit
TGGTGG136410.1328931942434577No Hit
GGTTGG136080.13257170202074425No Hit
GGGGTA134410.13094475653004287No Hit
TGTGGG133760.13031151427318305No Hit
TAGGGG130250.12689200608614004No Hit
GGGTAG130200.12684329514330467No Hit
GGGGAT129330.12599572473796922No Hit
GGAGGT128560.1252455762183045No Hit
GATGGG127500.12421290423019467No Hit
GAGTGG125060.1218358102198286No Hit
AGTGGG123360.120179638163426No Hit
GGATGG123240.12006273190062111No Hit
AGAGGG123080.11990685688354791No Hit
GAGGGT119510.11642889556510247No Hit
GGTAGG118730.11566900485687069No Hit
GGGAGT117910.11487014539437063No Hit
GTGGGA116310.11331139522363877No Hit
GTGAGG115820.11283402798385213No Hit
GGGATG113270.11034976989924823No Hit
AGGAGG113190.11027183239071163No Hit
GGGTGA111320.1084500431286688No Hit
TGCGGG109940.10710562110641256No Hit
TGAGGG109360.10654057416952226No Hit
GAAGGG109200.10638469915244908No Hit
GGTGGA109160.1063457303981808No Hit
GGTGAG109080.10626779288964419No Hit
AGGGGA106560.10381276137074152No Hit
TGGGGA105510.10278983157119874No Hit
GGTTTG105290.1025755034227231No Hit
TGGAGG104710.1020104564858328No Hit
GAGGTG104700.10200071429726575No Hit
AGGGAG103690.10101675325199125No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)