FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005484057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005484057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67998157
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT3559620.5234877174685779Illumina Single End PCR Primer 1 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT763370.11226333678426019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)