FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35155680
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACATCT3439438597.834503556751No Hit
GCAGATCT794500.22599477523973366No Hit
GCAAATCT712630.20270693099948572No Hit
GCCCATCT603250.17159389322009985No Hit
GCACAGCT548260.1559520396135134No Hit
GCACCTCT439760.12508931700368192No Hit
NCACATCT432720.12308679564724677No Hit
GCACATCG425670.12108142980024851No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)