FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35088667
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACATCT3427689397.68650658630035No Hit
GCACAGCT982450.2799906875915235No Hit
GCACATGT698140.19896452606763315No Hit
GCAAATCT591300.16851594846848983No Hit
GCCCATCT577280.16452035638743415No Hit
GCAGATCT523630.14923051935828738No Hit
GCACCTCT393220.1120646731892095No Hit
NCACATCT386770.11022647283808187No Hit
GCACATCG368940.10514506008449966No Hit
GCACACCT368700.10507666193189955No Hit
GCACAACT367370.10469762216957401No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)