FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35780864
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACATCT3433978595.97248685777963No Hit
NCACATCT6104601.7061074880696006No Hit
GCACAGCT754280.21080541822578683No Hit
GCACATCG731200.2043550429637473No Hit
GCCCATCT595790.16651079191380064No Hit
GCAAATCT540290.15099970755317701No Hit
GCACCTCT522780.14610603030714966No Hit
GCACATCC506270.141491832058611No Hit
GNACATCT499930.13971993521453255No Hit
GCACACCT459710.1284792899355365No Hit
GCACAACT389820.1089465028010503No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)