FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36144660
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGCT41000.089.125026
ACGACGC42400.087.035035
CACGACG46850.078.768094
GACGCTC65000.055.6528327
TACACGA72800.051.5132452
CTACACG78000.049.7754331
ACGCTCT78600.046.8534138
ACACGAC89450.041.6608283
CGCTCTT107150.034.436989
TAACCCT1474000.06.0795856
CTAACCC1577150.05.9070725
AACCCTA1591000.05.8807481
ACCCTAA1623200.05.80939672
CCCTAAC1637000.05.79300933
CCTAACC1629250.05.7626764
GTTCCGA91600.05.69874435
CGGTTAG28555.317561E-75.6769571
CGTTAGG38751.6425474E-95.51347351
CGCTAAG32752.3529356E-75.39882141
CGCTGAG71550.05.14824771
Produced by FastQC (version 0.11.5)