FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36144660
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACATCT3466064695.89423721235724No Hit
NCACATCT6910481.911895145783637No Hit
GCACAGCT793690.21958707039988756No Hit
GNACATCT762930.21107682296638008No Hit
GCACATCG697160.19288049742340915No Hit
GCCCATCT634000.17540627024849592No Hit
GCACCTCT499290.13813658781131155No Hit
GCACATCC483550.1337818643196533No Hit
GCAAATCT476640.13187010197356952No Hit
GCACACCT441190.12206229080588946No Hit
GCACAACT370270.10244113514970123No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)