FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35109641
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACATCT3422855197.49046138067888No Hit
GCACATCG971780.27678437384193133No Hit
GCACATGT832780.2371941085925658No Hit
NCACATCT741620.2112297303182337No Hit
GCCCATCT595020.16947481747249993No Hit
GCACAGCT574580.16365305472647812No Hit
GCAAATCT551200.1569939151471244No Hit
GCACCTCT417770.11899010872825501No Hit
GCACATCC354620.10100359613474828No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)