FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20344175
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG1952443995.97065990633683No Hit
NAGTAGAG2725391.3396414452785625No Hit
AAGGAGAG754890.371059529324733No Hit
AAGAAGAG565500.2779665432488661No Hit
AAGTGGAG476510.23422429270294814No Hit
ANGTAGAG432840.21275868891218247No Hit
AGGTAGAG392970.19316094164545872No Hit
AAGTAGAA352880.17345505531681674No Hit
AAGTCGAG327860.16115669472957247No Hit
AAGTAGGG301220.14806203741365773No Hit
AAGTTGAG221470.10886162746830481No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)