FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19923601
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1942939997.51951467006391No Hit
NACTTGAC2000161.003914904740363No Hit
ANCTTGAC572620.2874078837455137No Hit
AACTTGAA243410.12217168974624616No Hit
AGCTTGAC200400.10058422671684701No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)