FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18075539
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1758439597.2828251483953No Hit
NATGCTTA1803810.9979287477955706No Hit
CNTGCTTA510510.2824314118655051No Hit
CATGCTAA417730.23110237542570655No Hit
CATGCGTA239840.13268760616211775No Hit
AATGCTTA201340.11138810300483987No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)