FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17919603
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1739729097.08524234604974No Hit
NATGCTTA1712540.9556796542869839No Hit
CATGCTAA445060.24836487727992634No Hit
CNTGCTTA366180.20434604494307157No Hit
CATGCGTA247070.1378769384567281No Hit
CATGGTTA237110.13231877960689195No Hit
AATGCTTA221780.12376390258199359No Hit
CAGGCTTA180800.1008950923745353No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)