FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16823617
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1646206197.8509020979258No Hit
NTCGCTGA1199490.7129798544510375No Hit
TTCGCTAA327040.19439339352530433No Hit
GTCGCTGA195920.11645533775525203No Hit
TTCGCTGG180220.1071232185088379No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)