FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16663272
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1624228497.47355741417411No Hit
NTCGCTGA968090.5809723324446723No Hit
TTCGCGGA388950.23341754248505336No Hit
TTCGCTAA330370.19826238208198246No Hit
GTCGCTGA305930.18359539470999453No Hit
ATCGCTGA235760.14148481762765439No Hit
TTCGCTGG211090.12667980214210028No Hit
TTCGCTGC185740.11146670353817664No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)