FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19030430
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG11800.093.378929
ACGACCG26750.080.745641
GTGCGAC34450.078.21311
TTTGCGC31600.076.694071
CGCCGAA27250.073.352861
TGCGCGA27800.072.691761
GACGCGT30550.072.379671
GCGCTAG31100.069.687071
CGGTACG28700.068.626411
GCGCGTA32200.067.761231
TTACCCG35200.067.394311
CCGCTAT33500.066.880191
GTTACGC29150.065.65278
GGCGACT37250.065.6509551
ATAACGC36650.065.127521
GTTCGCG35650.064.866198
TAGGCGC35450.064.0274661
TCGCGAT21150.063.4086658
CGAACGC36700.062.8442231
CCTTACG33350.062.131451
Produced by FastQC (version 0.11.5)