FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19086986
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1835124096.14530025851121No Hit
NGCAATTC2547991.3349357515115272No Hit
AGCAATTA578290.30297606966338214No Hit
ANCAATTC415210.21753565492215482No Hit
AGCAGTTC353650.1852833129337445No Hit
AGCAAGTC339560.1779013197788273No Hit
AGCAATGC339460.17784892806019767No Hit
AGGAATTC261480.1369938658727994No Hit
AGCACTTC252060.1320585659778867No Hit
AGCAATTG191920.10055018639401737No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)