FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19150960
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1854627796.84254470794154No Hit
NGCAATTC2140971.1179439568564709No Hit
AGCAATTA498020.2600496267550034No Hit
AGCAAGTC468740.24476057597112624No Hit
ANCAATTC333480.17413226282128938No Hit
AGCAAATC247260.12911102106630687No Hit
AGCAGTTC245350.12811368202951706No Hit
AGCACTTC244570.12770639174224163No Hit
AGCAATGC197110.10292434426263748No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)