FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19264115
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1870238597.08406018132678No Hit
NGCAATTC2098451.0893051666271718No Hit
AGCAATTA480740.24955208168140605No Hit
ANCAATTC278930.14479253264424555No Hit
AGCAAGTC256200.13299339211793534No Hit
AGCACTTC233410.12116310559815492No Hit
AGCAGTTC223840.11619531963965124No Hit
AGCAATGC200020.10383036023196499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)