FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22529815
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2190556797.22923601458778No Hit
NTGAGCCT2173110.9645485326887948No Hit
TNGAGCCT454260.2016261562733649No Hit
TTGAGCCA272170.12080436523779711No Hit
TTGAGCCG270430.12003205530094234No Hit
GTGAGCCT257000.11407106538602292No Hit
TTGGGCCT251260.11152333030697323No Hit
TGGAGCCT228380.10136789849361835No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)