FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21333540
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2070397497.04893796341348No Hit
NGTCGGAT2428171.1381936612489068No Hit
TNTCGGAT372080.17441081039527428No Hit
TGTCGGGT351140.16459528048322034No Hit
TGTCGGCT315870.14806262814328985No Hit
TGGCGGAT312480.14647358103718372No Hit
TGTCGGAA246300.11545200655868645No Hit
TGCCGGAT233240.10933019086377602No Hit
TGTCGGAG214400.1004990264156816No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)