FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20537444
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1992958197.04022077917777No Hit
NATAGCGA2294141.1170523459491843No Hit
CATAGGGA374230.18221839095459005No Hit
CNTAGCGA358220.17442287365457942No Hit
CATAGAGA269330.1311409540544578ABI Solid3 Adapter B (100% over 8bp)
CATAGCGC238120.11594432101677307No Hit
CATAGCAA233240.11356817333257245No Hit
AATAGCGA230840.11239957611083444No Hit
CATAGCGG227230.11064181112313684No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)