FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20686186
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA2011772597.2519777207843No Hit
NATAGCGA2252531.0889054173640322No Hit
CNTAGCGA301510.14575427292396964No Hit
CATAGCAA239830.11593727330886419No Hit
AATAGCGA233460.11285792364044295No Hit
CATAGCGC230000.11118530984880443No Hit
CGTAGCGA218930.1058339125443424No Hit
CATAGCGG210940.10197143156307306No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)