FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22718131
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2209272297.24709308173283No Hit
NTGAGCCT2062580.9079003902213612No Hit
TTGGGCCT394180.17350899156273022No Hit
TNGAGCCT347670.15303635673198646No Hit
TTGAGCGT346690.1526049832180297No Hit
TTGAGCCA267140.1175888984881723No Hit
TTGAGCAT263760.11610110004207652No Hit
TTGAGCCG247450.10892181227408188No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)