FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20454761
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1972141896.41480533554022No Hit
NATAGCGA2748631.3437605064170635No Hit
CNTAGCGA443920.21702526859150298No Hit
CAGAGCGA413400.2021045369339686No Hit
CATAGCGG312390.1527223906453857No Hit
CATAGCAA306480.1498330877588841No Hit
CGTAGCGA296870.1451349150449619No Hit
CATGGCGA267070.13056617967816883No Hit
CATAGGGA264570.12934397033531703No Hit
CATAGCGC245050.11980095978633043No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)