FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20874474
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG2031200697.30547461938443No Hit
NAGTAGAG1488180.7129185626425844No Hit
AAGGAGAG701500.3360563720072659No Hit
AAGAAGAG420890.20162903266448773No Hit
AAGTGGAG342080.16387478793477622No Hit
AAGTCGAG296770.1421688517756184No Hit
AAGTAGAA251060.12027129402158829No Hit
AGGTAGAG231780.11103513314874425No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)