FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19953437
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1916316796.03942919708518No Hit
NACATCCT2655051.33062288968061No Hit
CACATCCA775560.3886849167890224No Hit
CNCATCCT433180.21709543072704718No Hit
CACAGCCT367550.1842038542031631No Hit
CACATGCT349890.17535324866588148No Hit
CGCATCCT307560.15413885838314473No Hit
AACATCCT261050.13082959091208196No Hit
CAGATCCT254450.12752189008840933No Hit
CACATCCG248490.12453493601127465No Hit
CACATACT221920.11121893436203498No Hit
CACATCGT214010.10725470504154247No Hit
CACGTCCT209570.10502952448743542No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)