FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20625552
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG1995327096.74053814414276No Hit
NAGTAGAG1843070.893585781364785No Hit
AAGGAGAG875010.4242359186314141No Hit
AAGAAGAG521170.25268172216675705No Hit
AAGTAGGG396430.19220334078816412No Hit
AAGTGGAG326920.15850242456541286No Hit
ANGTAGAG312630.15157412514341434No Hit
AAGTCGAG299490.14520338655663614No Hit
AAGTAGAA245650.11909984275814775No Hit
AGGTAGAG229390.11121641738364141No Hit
AAGTAGCG224920.10904920265891552No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)