FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19103562
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1857936497.2560195842011No Hit
NGCAATTC1083390.5671141329559377No Hit
AGCAATTA509270.2665837920697721No Hit
AGCAAGTC507880.2658561790727823No Hit
AGCAGTTC316280.16556074725750097No Hit
AGCAATGC279910.14652241294058144No Hit
AGCACTTC258340.13523132492254586No Hit
GGCAATTC245470.12849436141804338No Hit
CGCAATTC227020.11883647667382659No Hit
AGCAAATC215280.11269102589349567No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)