FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20683170
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG2005533796.96452236286798No Hit
NAGTAGAG1166220.5638497387005957No Hit
AAGGAGAG863530.41750369986805697No Hit
AAGAAGAG437090.21132640692891852No Hit
AAGTGGAG429770.20778729759509787No Hit
AAGTCGAG330360.1597240655083336No Hit
AGGTAGAG283300.13697126697696727No Hit
GAGTAGAG274780.13285197578514318No Hit
AAGTAGAA271730.13137734689605124No Hit
AAGTTGAG249450.12060530373245494No Hit
AAGTAGGG246230.11904848241347918No Hit
CAGTAGAG225430.10899199687475372No Hit
AAGTAGCG217540.10517730115838142No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)