FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21399683
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2079797397.18822937704265No Hit
NGTCGGAT2067710.9662339390728358No Hit
TNTCGGAT430770.20129737435830242No Hit
TGTCGGGT369730.1727735873470649No Hit
TGGCGGAT307010.14346474197771997No Hit
TGTCGGCT303170.14167032287347434No Hit
TGTCGGAA233820.10926330076945533No Hit
TGCCGGAT221070.10330526858738982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)