FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18077003
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1756066097.14364709681135No Hit
NATGCTTA1623840.898290496494358No Hit
CATGCTAA535030.29597273397586976No Hit
CATGCTGA340680.18846044335999723No Hit
CNTGCTTA277560.1535431509304944No Hit
CATGCGTA267060.14773466597311513No Hit
AATGCTTA252110.13946448977189416No Hit
CAGGCTTA218960.12112627297788245No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)