FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20564404
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG1989539996.74678147735281No Hit
NAGTAGAG1955970.951143539097948No Hit
AAGGAGAG715650.3480042504514111No Hit
AAGTGGAG488280.23743941229709356No Hit
AAGAAGAG463720.2254964452166958No Hit
ANGTAGAG404970.19692766199302444No Hit
AAGTCGAG340780.16571353101213143No Hit
AAGTAGAA247570.12038763681164794No Hit
AGGTAGAG245560.11941021971752744No Hit
AAGTAGGG221190.10755964529776793No Hit
AAGTTGAG213070.10361107474838561No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)