FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21258151
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2046796196.28288462152706No Hit
NGTCGGAT2883691.3565102628163663No Hit
TGGCGGAT565080.26581803845499075No Hit
TGTCGGGT466560.219473462202804No Hit
TNTCGGAT455740.21438364982918787No Hit
TGTCGGAA364880.1716423973091545No Hit
TGTCGGAG320880.1509444542001795No Hit
TGTCGGCT319200.150154169099655No Hit
TGTAGGAT287270.13513404811171018No Hit
TGACGGAT264300.12432878099322937No Hit
TGCCGGAT262050.12327036344788407No Hit
TATCGGAT227310.10692839654775244No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)