FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20123910
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1951047796.95172061493021No Hit
NACATCCT1911420.949825357000702No Hit
CACATCCA684570.3401774307279251No Hit
CNCATCCT406870.2021823790704689No Hit
CACAGCCT399730.19863436081755484No Hit
AACATCCT295960.1470688350325558No Hit
CACATGCT202400.10057687596495911No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)