FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19384366
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1880896997.03164395472103No Hit
NGCAATTC1726590.8907126495651186No Hit
AGCAATGC470060.242494389550837No Hit
AGCAATTA461560.23810941250283862No Hit
ANCAATTC297090.15326268602233367No Hit
AGCAAGTC260270.13426799720971014No Hit
AGCACTTC240270.12395040415559631No Hit
AGCGATTC234480.12096346096643036No Hit
AGCAGTTC229240.11826025158625254No Hit
AGCAATAC220980.11399908565490355No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)