FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22328077
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2151026996.33731109042664No Hit
NTGAGCCT3010261.3481949206821529No Hit
TNGAGCCT480410.21515959480075245No Hit
TTGAGCCA402080.1800782037790357No Hit
TTGAGCCG394180.17654005761445554No Hit
TGGAGCCT391360.17527707379368138No Hit
TTGAGGCT329040.14736602708777832No Hit
TTGGGCCT326560.146255317912062No Hit
TTGAGCGT259050.11601984353601075No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)