FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22425708
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2175044596.98888882348776No Hit
NTGAGCCT2545581.1351168935223805No Hit
TTGAGGCT457530.20402031454257763No Hit
TNGAGCCT390580.1741661846306034No Hit
TTGAGACT316190.14099443370974063No Hit
TGGAGCCT311910.13908590979602517No Hit
TTGAGCCA286340.12768381716198213No Hit
TTGAGCCG276880.12346544421250825No Hit
GTGAGCCT251980.1123621158359861No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)