FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21274421
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2071698497.37977827927726No Hit
NGTCGGAT1249080.587127612074613No Hit
TGTCGGGT425750.20012295516761655No Hit
TGGCGGAT414830.19499003051598912No Hit
TGTCGGCT357120.16786355783783727No Hit
GGTCGGAT303570.14269248502697207No Hit
AGTCGGAT277910.13063105219173768No Hit
TGTCGGAG253360.11909137268647639No Hit
TGTCGGAA247330.11625698297500082No Hit
TGTAGGAT231690.10890543155087512No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)