FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19552019
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1911021897.74038169664217No Hit
NACTTGAC1123480.5746107345742657No Hit
GACTTGAC320920.16413650170859592No Hit
CACTTGAC300400.1536414218910078No Hit
AACTTGAA273430.13984745002549354No Hit
TACTTGAC246490.12606882184392312No Hit
AACTTGCC211850.10835198145009986No Hit
AGCTTGAC206000.10535996308105061No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)