FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22567559
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2193990897.21879092018769No Hit
NTGAGCCT2501771.1085691633729637No Hit
TNGAGCCT326880.1448450849292119No Hit
TGGAGCCT321200.14232819774615413No Hit
TTGAGCCA283510.12562723332195563No Hit
TTGAGCCG276880.12268938789525266No Hit
GTGAGCCT241210.10688351363122614No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)