FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23288568
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2262807197.16385739131749No Hit
NGTCCAGA2615151.1229329343049346No Hit
GNTCCAGA409310.17575576136755167No Hit
GGTCCGGA394780.16951664868359445No Hit
GGGCCAGA326200.14006872384768357No Hit
GGTACAGA233830.10040548650307739No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)