FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19756027
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1934815997.93547558929738No Hit
NACTTGAC1408780.713088719710699No Hit
AACTTGAA253850.1284924342328546No Hit
CACTTGAC223870.11331731830494056No Hit
GACTTGAC198690.10057184068436432No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)