FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20654668
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG1998673996.76620800682926No Hit
NAGTAGAG2260461.0944063588918496No Hit
AAGGAGAG666430.32265345538354817No Hit
AAGAAGAG456940.22122844095097535No Hit
AAGTGGAG330070.15980406947233428No Hit
AGGTAGAG329200.15938285718269593No Hit
AAGTCGAG309400.1497966464529955No Hit
ANGTAGAG296600.14359950012268413No Hit
AAGTAGAA248990.1205490206862681No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)