FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20294309
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG1960471396.60202276411579No Hit
NAGTAGAG2280951.1239357792374207No Hit
AAGGAGAG675960.3330785985371564No Hit
AAGAAGAG467320.2302714519622225No Hit
AAGTGGAG353170.17402415623020226No Hit
ANGTAGAG351750.17332445268276933No Hit
AAGTCGAG319320.15734460335653705No Hit
AGGTAGAG306590.15107190887849398No Hit
AAGTAGAA245250.12084668662529974No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)