FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16809603
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1635450997.29265468077979No Hit
NTCGCTGA1851571.1014953773744685No Hit
TTCGCTAA323730.19258634484110065No Hit
TNCGCTGA246040.14636871554908226No Hit
TTCGCGGA191210.11375045561754195No Hit
TTCGCTGG183430.10912214880982019No Hit
TTCGCTGC170360.10134683133206657No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)