FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19102411
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1853499797.02962102532501No Hit
NGGATCTA1707690.8939656884149336No Hit
AGGGTCTA403200.21107283263877002No Hit
AGGATCAA325860.17058579673529167No Hit
AGGATCGA320620.1678426875015934No Hit
AGGAGCTA309540.16204237255705575No Hit
AGGATGTA301010.1575769676403675No Hit
ANGATCTA292290.15301209883925124No Hit
AGGCTCTA201790.10563588020381302No Hit
CGGATCTA201750.10561494043867029No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)