FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19030430
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1857132597.58752166924236No Hit
NGGATCTA1346760.7076876350140275No Hit
AGGAGCTA311580.16372725156499354No Hit
AGGATGTA298550.1568803227252353No Hit
AGGGTCTA259950.13659701856447806No Hit
AGGATCAA203800.10709164217518996No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)