FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19609429
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1907045197.25143450122897No Hit
NACTTGAC2203231.1235564278796695No Hit
ANCTTGAC346040.17646612759606614No Hit
AACTTGAA262460.13384377484933396No Hit
AGCTTGAC257810.13147246663837076No Hit
CACTTGAC221740.11307825434386691No Hit
AACTTAAC197310.10061996195809679No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)