FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18850805
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1832009797.18469317358065No Hit
NGGATCTA1083900.5749887073788096No Hit
AGGATGTA522450.2771499678660938No Hit
AGGAGCTA406290.2155292572386166No Hit
AGGGTCTA307810.16328745642427472No Hit
GGGATCTA286440.1519510705245744No Hit
CGGATCTA258330.1370392404992784No Hit
AGGATATA238250.12638717550788944No Hit
AGGATCAA216180.11467945268119849No Hit
AGGCTCTA189250.10039359061854389No Hit
TGGATCTA189080.10030340879341756No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)